Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W | X | Z A abort_writing() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) accept_new_state() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) Acquisition (class in mesoSPIM.src.utils.acquisitions) AcquisitionList (class in mesoSPIM.src.utils.acquisitions) add_images_to_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) add_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) adjust_levels() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) append_time_index_to_filenames() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) append_timing_info_to_metadata() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) auto_illumination() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) B block_signals() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) block_till_controller_is_ready() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) bundle_galvo_and_etl_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) C calculate_samples() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) cascade_all_windows() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) center_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) change_overlay() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) check_config_file() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) check_filename_extensions() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_duplicated_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_existing_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_nonexisting_folders() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_instances() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) check_motion_limits() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) check_versions() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) choose_etl_config() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) choose_snap_folder() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) close() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) close_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_app() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) close_camera() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) close_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_live_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) close_shutters() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) close_window() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) config_check() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) connect_combobox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) connect_spinbox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) connect_widget_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) convert_seconds_to_string() (in module mesoSPIM.src.utils.utility_functions) copy_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) create_etl_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_galvo_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_internal_position_dict() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) create_laser_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_position_dict() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) create_results_window() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) create_script_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) create_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_widget_list() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) D delete_all_rows() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) delete_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) Demo_Camera (class in mesoSPIM.src.devices.cameras.Demo_Camera) DemoZoom (class in mesoSPIM.src.mesoSPIM_Zoom) disable() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) disable_all() (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method) disable_auto_range() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) disable_gui() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) discard_new_state() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) display_information() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) display_no_row_selected_warning() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) display_status_message() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) display_warning() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) double_wheel (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel attribute) draw_crosshairs() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) draw_lightsheet_marker() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) drawPrimitive() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.MyStyle method) DynamixelFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) DynamixelZoom (class in mesoSPIM.src.mesoSPIM_Zoom) E enable() (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method) (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) enable_gui() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_mode_control_buttons() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_move_buttons() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_stop_button() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_ttl_motion() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) end_acquisition() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) end_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) end_live() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) execute_galil_program() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) execute_program() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) execute_script() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) execute_stage_program() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) F f_encodercounts_per_um (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute) find_value_index() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) finished() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) format_data_size() (in module mesoSPIM.src.utils.utility_functions) frame_queue_display (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) G gb_size_of_array_shape() (in module mesoSPIM.src.utils.utility_functions) generate_filenames() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) get_acquisition_time() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_all_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_capitalized_keylist() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_delta_dict() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_delta_z_and_delta_f_dict() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_duplicates_in_list() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_endpoint() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_first_selected_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) get_focus_stepsize_generator() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_free_disk_space() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) get_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_image_count() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_image_shape() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) get_images_in_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_keylist() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_live_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_n_angles() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_n_lasers() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_n_shutter_configs() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_n_tiles() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_parameter_dict() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) get_parameter_list() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) get_params_from_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) get_required_disk_space() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) get_roi() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) get_roi_dims() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) get_selected_rows() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) get_startpoint() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) get_tile_index() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_unique_attr_list() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) GetCurrentProcessorNumber() (in module mesoSPIM.src.utils.utility_functions) go_to_rotation_position() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) H hide_light_sheet_marker() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) I image_to_disk() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) ini_subsampling (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow attribute) initialize_and_connect_menubar() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) initialize_and_connect_widgets() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) initialize_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) initialize_live_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) instance (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton attribute) int_theta_pos (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) int_theta_pos_offset (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) L launch_contrast_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) launch_optimizer() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) lightsheet_alignment_mode() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) list_to_string_with_carriage_return() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) live() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) load_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) load_table() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) log_cpu_core() (in module mesoSPIM.src.utils.utility_functions) log_slice() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) logger (in module mesoSPIM.src.mesoSPIM_Core) (in module mesoSPIM.src.mesoSPIM_WaveFormGenerator) LudlFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) M mark_all_current_parameters() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_etl_parameters() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_focus() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_rotation() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_state() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_xy_position() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mesoSPIM.src.devices.cameras.Demo_Camera module mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel module mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler module mesoSPIM.src.devices.shutters.NI_Shutter module mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow module mesoSPIM.src.mesoSPIM_Camera module mesoSPIM.src.mesoSPIM_CameraWindow module mesoSPIM.src.mesoSPIM_Core module mesoSPIM.src.mesoSPIM_ImageWriter module mesoSPIM.src.mesoSPIM_MainWindow module mesoSPIM.src.mesoSPIM_Optimizer module mesoSPIM.src.mesoSPIM_Serial module mesoSPIM.src.mesoSPIM_Stages module mesoSPIM.src.mesoSPIM_State module mesoSPIM.src.mesoSPIM_WaveFormGenerator module mesoSPIM.src.mesoSPIM_Zoom module mesoSPIM.src.utils.acquisitions module mesoSPIM.src.utils.utility_functions module mesoSPIM_AcquisitionManagerWindow (class in mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow) mesoSPIM_ASI_Stages (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_Camera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_CameraWindow (class in mesoSPIM.src.mesoSPIM_CameraWindow) mesoSPIM_Core (class in mesoSPIM.src.mesoSPIM_Core) mesoSPIM_DemoCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_DemoFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) mesoSPIM_DemoStage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_DemoWaveFormGenerator (class in mesoSPIM.src.mesoSPIM_WaveFormGenerator) mesoSPIM_GenericCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_HamamatsuCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_ImageWriter (class in mesoSPIM.src.mesoSPIM_ImageWriter) mesoSPIM_LaserEnabler (class in mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler) mesoSPIM_MainWindow (class in mesoSPIM.src.mesoSPIM_MainWindow) mesoSPIM_Optimizer (class in mesoSPIM.src.mesoSPIM_Optimizer) mesoSPIM_PCOCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_PhotometricsCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_PI_1toN (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_PI_NtoN (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_PI_rotz_and_Galil_xyf_Stages (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_Serial (class in mesoSPIM.src.mesoSPIM_Serial) mesoSPIM_Stage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_StateSingleton (class in mesoSPIM.src.mesoSPIM_State) mesoSPIM_WaveFormGenerator (class in mesoSPIM.src.mesoSPIM_WaveFormGenerator) MitutoyoZoom (class in mesoSPIM.src.mesoSPIM_Zoom) module mesoSPIM.src.devices.cameras.Demo_Camera mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler mesoSPIM.src.devices.shutters.NI_Shutter mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow mesoSPIM.src.mesoSPIM_Camera mesoSPIM.src.mesoSPIM_CameraWindow mesoSPIM.src.mesoSPIM_Core mesoSPIM.src.mesoSPIM_ImageWriter mesoSPIM.src.mesoSPIM_MainWindow mesoSPIM.src.mesoSPIM_Optimizer mesoSPIM.src.mesoSPIM_Serial mesoSPIM.src.mesoSPIM_Stages mesoSPIM.src.mesoSPIM_State mesoSPIM.src.mesoSPIM_WaveFormGenerator mesoSPIM.src.mesoSPIM_Zoom mesoSPIM.src.utils.acquisitions mesoSPIM.src.utils.utility_functions move_absolute() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) move_relative() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) move_selected_row_down() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) move_selected_row_up() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mutex (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton attribute) MyStyle (class in mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow) N NI_Shutter (class in mesoSPIM.src.devices.shutters.NI_Shutter) O open() (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) open_camera() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) open_shutters() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) open_tiff() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) open_tile_view_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) open_webcam_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) P pitools (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute) plot_results() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) pos2str() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) prepare_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) prepare_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) prepare_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) prepare_live() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) preview_acquisition() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) print_camera_properties() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) px2um() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) R read() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) read_config_parameter() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) replace_with_underscores() (in module mesoSPIM.src.utils.utility_functions) report_position() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) report_pvcam_parameter() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) rescale_galvo_amplitude_by_zoom() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) results_string() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) run_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) run_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_focus_tracking_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_image_processing_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_lightsheet_alignment_mode() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_live() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_optimization() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) run_selected_acquisition() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_snap() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) run_tiling_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_time_lapse() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) run_timepoint() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_visual_mode() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) S save_etl_config() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) save_etl_parameters_to_csv() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) save_table() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) scale_galvo_amp_w_zoom() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) selected_row_changed() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) send_progress() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) send_status_message() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) send_status_message_to_gui() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_binning() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_camera_binning() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_display_acquisition_subsampling() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_display_live_subsampling() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_exposure_time() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_camera_line_interval() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_camera_sensor_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) set_etl_amp_to_zero() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_exposure_time() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_filter() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.DynamixelFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.LudlFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.mesoSPIM_DemoFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.ZwoFilterWheel method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) set_folder_names() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_image() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) set_intensity() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_item_delegates() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_laser() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_laser_intensity() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_line_interval() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_mode_from_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_parameters() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) set_progressbars_to_busy() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_progressbars_to_standard() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_roi() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_selected_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_shutterconfig() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_speed_from_config() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) set_state() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_zoom() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Zoom.DemoZoom method) (mesoSPIM.src.mesoSPIM_Zoom.DynamixelZoom method) (mesoSPIM.src.mesoSPIM_Zoom.MitutoyoZoom method) sig_add_images_to_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_center_sample (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_enable_gui (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_end_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_end_live (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_execute_script (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_finished (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_get_snap_image (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_launch_contrast_window (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_launch_optimizer (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_load_sample (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_move_absolute (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer attribute) sig_move_relative (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_move_relative_and_wait_until_done (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_poke_demo_thread (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_polling_stage_position_start (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_polling_stage_position_stop (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_position (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) sig_prepare_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_progress (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_run_timepoint (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_save_etl_config (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_state_request (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) sig_state_request_and_wait_until_done (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_status_message (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) sig_stop (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_stop_movement (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_unload_sample (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_unzero_axes (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) sig_update_roi (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow attribute) sig_update_status (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow attribute) sig_warning (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_write_images (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera attribute) sig_write_metadata (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_zero_axes (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) slow_down_spinbox() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) snap() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) snap_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) snap_image_in_series() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) spinbox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) stage_limits_OK() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) stage_limits_warning (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) start() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) start_selected() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) start_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) startAcquisition() (mesoSPIM.src.devices.cameras.Demo_Camera.Demo_Camera method) state (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) state() (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method) (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) state_request_handler() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) statusBar (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) stop() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) stop_movement() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) stop_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) SutterLambda10BFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) T theta_pos (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) timed() (in module mesoSPIM.src.utils.utility_functions) U unload_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) unzero_axes() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) update_acquisition_size_prediction() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) update_acquisition_time_prediction() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) update_etl_increments() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_etl_parameters_from_csv() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_etl_parameters_from_laser() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_etl_parameters_from_zoom() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) update_GUI_by_shutter_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_gui_from_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_image() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) update_image_from_deque() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) update_position_indicators() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_progressbars() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_status() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) update_widget_from_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) V visual_mode() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) W wait_for_controller() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) wait_until_done_delay (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.LudlFilterWheel attribute) write_images() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_line() (in module mesoSPIM.src.utils.utility_functions) write_metadata() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_snap_image() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_snap_metadata() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_waveforms_to_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) X xyf_stage (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute) Z zero_axes() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) zero_galvo_amp() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) zero_left_etl() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) zero_right_etl() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) ZwoFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel)