Index

A

abort_writing() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) AbstractSelectionPage (class in mesoSPIM.src.utils.filename_wizard) accept_new_state() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) Acquisition (class in mesoSPIM.src.utils.acquisitions) AcquisitionList (class in mesoSPIM.src.utils.acquisitions) AcquisitionListBuilder (class in mesoSPIM.src.utils.multicolor_acquisition_builder) AcquisitionModel (class in mesoSPIM.src.utils.models)

add_images_to_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) add_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) adjust_levels() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) append_time_index_to_filenames() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) append_timing_info_to_metadata() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) auto_illumination() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) axis_handler() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) axis_in_config_check() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method)

B

bigtiff (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) block_signals() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) block_till_controller_is_ready() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method)

braces (mesoSPIM.src.mesoSPIM_ScriptWindow.PythonHighlighter attribute) bundle_galvo_and_etl_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) button_handler() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method)

C

calculate_f_pos() (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizard method) calculate_samples() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) Calibrate() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) calibrated (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW attribute) cascade_all_windows() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) center_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) cfg (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler attribute) change_overlay() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) check_config_file() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) check_filename_extensions() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_duplicated_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_existing_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_for_nonexisting_folders() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) check_instances() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) check_motion_limits() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) check_versions() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) CheckTilingPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) choose_etl_config() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) choose_folder() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineFolderPage method) choose_folder_dialog() (mesoSPIM.src.utils.delegates.ChooseFolderDelegate method) choose_snap_folder() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) ChooseFolderDelegate (class in mesoSPIM.src.utils.delegates) cleanupPage() (mesoSPIM.src.utils.filename_wizard.FilenameWizardCheckResultsPage method) close() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) Close() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) close() (mesoSPIM.src.devices.shutters.Demo_Shutter.Demo_Shutter method) (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) close_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_app() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) close_camera() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) close_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method)

close_live_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) close_shutters() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) close_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) close_window() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) closeEvent() (mesoSPIM.src.mesoSPIM_ContrastWindow.mesoSPIM_ContrastWindow method) columnCount() (mesoSPIM.src.utils.models.AcquisitionModel method) ComboDelegate (class in mesoSPIM.src.utils.delegates) config_check() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) connect_combobox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) connect_spinbox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) connect_widget_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) convert_seconds_to_string() (in module mesoSPIM.src.utils.utility_functions) convert_string_to_list() (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizard method) copy_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) copyRow() (mesoSPIM.src.utils.models.AcquisitionModel method) create_etl_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_galvo_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_internal_position_dict() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) create_laser_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_position_dict() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) create_results_window() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) create_script_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) create_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_waveforms() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) create_widget_list() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) createEditor() (mesoSPIM.src.utils.delegates.ChooseFolderDelegate method) (mesoSPIM.src.utils.delegates.ComboDelegate method) (mesoSPIM.src.utils.delegates.ETLSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.IntensitySpinBoxDelegate method) (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) (mesoSPIM.src.utils.delegates.ProgressBarDelegate method) (mesoSPIM.src.utils.delegates.RotationSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.SliderDelegate method) (mesoSPIM.src.utils.delegates.SliderWithValueDelegate method) (mesoSPIM.src.utils.delegates.ZstepSpinBoxDelegate method) currentIndexChanged() (mesoSPIM.src.utils.delegates.ComboDelegate method)

D

dark_mode_check() (in module mesoSPIM.mesoSPIM_Control) data() (mesoSPIM.src.utils.models.AcquisitionModel method) decrease_slider() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) decrement_combobox() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) DefineBoundingBoxPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) DefineFolderPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) DefineGeneralParametersPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) delete_all_rows() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) delete_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) deleteTable() (mesoSPIM.src.utils.models.AcquisitionModel method) Demo_Camera (class in mesoSPIM.src.devices.cameras.Demo_Camera) Demo_JoystickHandler (class in mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers) Demo_LaserEnabler (class in mesoSPIM.src.devices.lasers.Demo_LaserEnabler) Demo_Shutter (class in mesoSPIM.src.devices.shutters.Demo_Shutter) Demo_SidePanel (class in mesoSPIM.src.devices.joysticks.Demo_SidePanel) DemoZoom (class in mesoSPIM.src.mesoSPIM_Zoom) disable() (mesoSPIM.src.devices.lasers.Demo_LaserEnabler.Demo_LaserEnabler method) (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) disable_all() (mesoSPIM.src.devices.lasers.Demo_LaserEnabler.Demo_LaserEnabler method) (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method)

disable_gui() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) discard_new_state() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) display_information() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) display_no_row_selected_warning() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) display_status_message() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) display_warning() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) done() (mesoSPIM.src.utils.filename_wizard.FilenameWizard method) (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizard method) (mesoSPIM.src.utils.image_processing_wizard.ImageProcessingWizard method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) double_wheel (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel attribute) draw_crosshairs() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) draw_lightsheet_marker() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) drawPrimitive() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.MyStyle method) dropMimeData() (mesoSPIM.src.utils.models.AcquisitionModel method) DynamixelFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) DynamixelZoom (class in mesoSPIM.src.mesoSPIM_Zoom)

E

EFW (class in mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw) EFW_Error EFW_IOError enable() (mesoSPIM.src.devices.lasers.Demo_LaserEnabler.Demo_LaserEnabler method) (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method) (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) enable_all() (mesoSPIM.src.devices.lasers.Demo_LaserEnabler.Demo_LaserEnabler method) enable_gui() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_mode_control_buttons() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_move_buttons() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) enable_stop_button() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method)

enable_ttl_mode() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) enable_ttl_motion() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) end_acquisition() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) end_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) end_live() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) ETLSpinBoxDelegate (class in mesoSPIM.src.utils.delegates) execute_galil_program() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) execute_program() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) execute_script() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) (mesoSPIM.src.mesoSPIM_ScriptWindow.mesoSPIM_ScriptWindow method) execute_stage_program() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method)

F

f_encodercounts_per_um (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute) farm_panel_handler() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) FarmSimulatorSidePanel (class in mesoSPIM.src.devices.joysticks.logitech) FifthChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) FilenameWizard (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardBigTiffSelectionPage (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardCheckResultsPage (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardRawSelectionPage (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardSingleHDF5SelectionPage (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardTiffSelectionPage (class in mesoSPIM.src.utils.filename_wizard) FilenameWizardWelcomePage (class in mesoSPIM.src.utils.filename_wizard) FiltersNames (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW attribute) FiltersSlots (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW attribute) find_value_index() (mesoSPIM.src.utils.acquisitions.AcquisitionList method)

finished (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) finished() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) FinishedTilingPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) FirstChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) fit_gaussian_1d() (in module mesoSPIM.src.utils.optimization) fit_parabola_1d() (in module mesoSPIM.src.utils.optimization) flags() (mesoSPIM.src.utils.models.AcquisitionModel method) FocusTrackingWizard (class in mesoSPIM.src.utils.focus_tracking_wizard) FocusTrackingWizardCheckResultsPage (class in mesoSPIM.src.utils.focus_tracking_wizard) FocusTrackingWizardSetReferencePointsPage (class in mesoSPIM.src.utils.focus_tracking_wizard) FocusTrackingWizardWelcomePage (class in mesoSPIM.src.utils.focus_tracking_wizard) format() (in module mesoSPIM.src.mesoSPIM_ScriptWindow) format_data_size() (in module mesoSPIM.src.utils.utility_functions) FourthChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) frame_queue_display (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute)

G

gaussian_1d() (in module mesoSPIM.src.utils.optimization) gb_size_of_array_shape() (in module mesoSPIM.src.utils.utility_functions) generate_filename_list() (mesoSPIM.src.utils.filename_wizard.FilenameWizard method) generate_filenames() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) GenericChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) get_acquisition_list() (mesoSPIM.src.utils.models.AcquisitionModel method) (mesoSPIM.src.utils.multicolor_acquisition_builder.MulticolorTilingAcquisitionListBuilder method) get_acquisition_time() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_all_filenames() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_bin() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) get_capitalized_keylist() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_delta_dict() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_delta_z_and_delta_f_dict() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_dict() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) get_duplicates_in_list() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_edge_position() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineBoundingBoxPage method) get_endpoint() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_first_reference_point() (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizardSetReferencePointsPage method) get_first_selected_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) get_focus_stepsize_generator() (mesoSPIM.src.utils.acquisitions.Acquisition method) get_free_disk_space() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) get_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_image_count() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_image_shape() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) get_images_in_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_keylist() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_live_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) get_logger() (in module mesoSPIM.mesoSPIM_Control) get_n_angles() (mesoSPIM.src.utils.acquisitions.AcquisitionList method)

get_n_lasers() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_n_shutter_configs() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_n_tiles() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_parameter_dict() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) get_parameter_list() (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) get_params_from_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) get_parser() (in module mesoSPIM.mesoSPIM_Control) get_required_disk_space() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) get_roi() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) get_roi_dims() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) get_second_reference_point() (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizardSetReferencePointsPage method) get_selected_rows() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) get_startpoint() (mesoSPIM.src.utils.acquisitions.Acquisition method) (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) get_tile_index() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) get_unique_attr_list() (mesoSPIM.src.utils.acquisitions.AcquisitionList method) getColumnByName() (mesoSPIM.src.utils.models.AcquisitionModel method) GetCurrentProcessorNumber() (in module mesoSPIM.src.utils.utility_functions) getEndFocusColumn() (mesoSPIM.src.utils.models.AcquisitionModel method) getFilename() (mesoSPIM.src.utils.models.AcquisitionModel method) getFilenameColumn() (mesoSPIM.src.utils.models.AcquisitionModel method) getFilter() (mesoSPIM.src.utils.models.AcquisitionModel method) GetID() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) getImageCount() (mesoSPIM.src.utils.models.AcquisitionModel method) getLaser() (mesoSPIM.src.utils.models.AcquisitionModel method) getLaserList() (mesoSPIM.src.utils.models.AcquisitionModel method) getName() (mesoSPIM.src.utils.models.AcquisitionModel method) getNAngles() (mesoSPIM.src.utils.models.AcquisitionModel method) getNShutterConfigs() (mesoSPIM.src.utils.models.AcquisitionModel method) GetNum() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) GetPosition() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) GetProperty() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) getRotationPosition() (mesoSPIM.src.utils.models.AcquisitionModel method) getShutterconfig() (mesoSPIM.src.utils.models.AcquisitionModel method) getStartFocusColumn() (mesoSPIM.src.utils.models.AcquisitionModel method) getTileIndex() (mesoSPIM.src.utils.models.AcquisitionModel method) getTime() (mesoSPIM.src.utils.models.AcquisitionModel method) getTotalImageCount() (mesoSPIM.src.utils.models.AcquisitionModel method) getXPosition() (mesoSPIM.src.utils.models.AcquisitionModel method) getYPosition() (mesoSPIM.src.utils.models.AcquisitionModel method) getZEndPosition() (mesoSPIM.src.utils.models.AcquisitionModel method) getZoom() (mesoSPIM.src.utils.models.AcquisitionModel method) getZStartPosition() (mesoSPIM.src.utils.models.AcquisitionModel method) go_back() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) go_to_rotation_position() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) go_to_z_position() (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method)

H

handle_axis_value_changes() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) headerData() (mesoSPIM.src.utils.models.AcquisitionModel method)

hide_light_sheet_marker() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) highlight (mesoSPIM.src.mesoSPIM_ScriptWindow.mesoSPIM_ScriptWindow attribute) highlightBlock() (mesoSPIM.src.mesoSPIM_ScriptWindow.PythonHighlighter method)

I

IDs (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW attribute) image_to_disk() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) ImageProcessingWizard (class in mesoSPIM.src.utils.image_processing_wizard) ImageProcessingWizardCheckResultsPage (class in mesoSPIM.src.utils.image_processing_wizard) ImageProcessingWizardSetOptionsPage (class in mesoSPIM.src.utils.image_processing_wizard) ImageProcessingWizardWelcomePage (class in mesoSPIM.src.utils.image_processing_wizard) increase_slider() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) increment_combobox() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) ini_subsampling (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow attribute) init() (in module mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw) initialize_and_connect_menubar() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) initialize_and_connect_widgets() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) initialize_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method)

initialize_live_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) initializePage() (mesoSPIM.src.utils.filename_wizard.FilenameWizardCheckResultsPage method) (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizardCheckResultsPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.CheckTilingPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method) insertRows() (mesoSPIM.src.utils.models.AcquisitionModel method) instance (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton attribute) int_theta_pos (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) int_theta_pos_offset (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) IntensitySpinBoxDelegate (class in mesoSPIM.src.utils.delegates)

K

keywords (mesoSPIM.src.mesoSPIM_ScriptWindow.PythonHighlighter attribute)

L

launch_contrast_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) launch_optimizer() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) lightsheet_alignment_mode() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) list_to_string_with_carriage_return() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) live() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) load_config_from_file() (in module mesoSPIM.mesoSPIM_Control) load_config_UI() (in module mesoSPIM.mesoSPIM_Control) load_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method)

load_script() (mesoSPIM.src.mesoSPIM_ScriptWindow.mesoSPIM_ScriptWindow method) load_table() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) loadModel() (mesoSPIM.src.utils.models.AcquisitionModel method) log_cpu_core() (in module mesoSPIM.src.utils.utility_functions) log_slice() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) logger (in module mesoSPIM.src.mesoSPIM_Core) (in module mesoSPIM.src.mesoSPIM_WaveFormGenerator) LudlFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel)

M

main() (in module mesoSPIM.mesoSPIM_Control) mark_all_current_parameters() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_etl_parameters() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_focus() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_rotation() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_state() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) mark_current_xy_position() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) MarkFocusPositionDelegate (class in mesoSPIM.src.utils.delegates) MarkPositionDelegate (class in mesoSPIM.src.utils.delegates) MarkPositionWidget (class in mesoSPIM.src.utils.widgets) MarkRotationPositionDelegate (class in mesoSPIM.src.utils.delegates) MarkXPositionDelegate (class in mesoSPIM.src.utils.delegates) MarkYPositionDelegate (class in mesoSPIM.src.utils.delegates) MarkZPositionDelegate (class in mesoSPIM.src.utils.delegates) match_multiline() (mesoSPIM.src.mesoSPIM_ScriptWindow.PythonHighlighter method) mesoSPIM module mesoSPIM.mesoSPIM_Control module mesoSPIM.src module mesoSPIM.src.devices module mesoSPIM.src.devices.cameras module mesoSPIM.src.devices.cameras.Demo_Camera module mesoSPIM.src.devices.cameras.hamamatsu module mesoSPIM.src.devices.filter_wheels module mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel module mesoSPIM.src.devices.filter_wheels.ZWO_EFW module mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw module mesoSPIM.src.devices.joysticks module mesoSPIM.src.devices.joysticks.Demo_SidePanel module mesoSPIM.src.devices.joysticks.logitech module mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers module mesoSPIM.src.devices.lasers module mesoSPIM.src.devices.lasers.Demo_LaserEnabler module mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler module mesoSPIM.src.devices.servos module mesoSPIM.src.devices.shutters module mesoSPIM.src.devices.shutters.Demo_Shutter module mesoSPIM.src.devices.shutters.NI_Shutter module mesoSPIM.src.devices.stages module mesoSPIM.src.devices.stages.asi module mesoSPIM.src.devices.stages.asi.asicontrol module mesoSPIM.src.devices.stages.galil module mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow module mesoSPIM.src.mesoSPIM_Camera module mesoSPIM.src.mesoSPIM_CameraWindow module mesoSPIM.src.mesoSPIM_ContrastWindow module mesoSPIM.src.mesoSPIM_Core module mesoSPIM.src.mesoSPIM_ImageWriter module mesoSPIM.src.mesoSPIM_MainWindow module mesoSPIM.src.mesoSPIM_Optimizer module mesoSPIM.src.mesoSPIM_ScriptWindow module mesoSPIM.src.mesoSPIM_Serial module mesoSPIM.src.mesoSPIM_Stages module mesoSPIM.src.mesoSPIM_State module mesoSPIM.src.mesoSPIM_TileViewWindow module mesoSPIM.src.mesoSPIM_WaveFormGenerator module mesoSPIM.src.mesoSPIM_Zoom module mesoSPIM.src.utils module mesoSPIM.src.utils.acquisitions module mesoSPIM.src.utils.delegates module mesoSPIM.src.utils.filename_wizard module mesoSPIM.src.utils.focus_tracking_wizard module mesoSPIM.src.utils.image_processing_wizard module mesoSPIM.src.utils.models module mesoSPIM.src.utils.multicolor_acquisition_builder module mesoSPIM.src.utils.multicolor_acquisition_wizard module mesoSPIM.src.utils.optimization module mesoSPIM.src.utils.utility_functions module mesoSPIM.src.utils.waveforms module

mesoSPIM.src.utils.widgets module mesoSPIM.src.WebcamWindow module mesoSPIM.test module mesoSPIM_AcquisitionManagerWindow (class in mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow) mesoSPIM_ASI_MS2000_Stage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_ASI_Tiger_Stage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_Camera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_CameraWindow (class in mesoSPIM.src.mesoSPIM_CameraWindow) mesoSPIM_ContrastWindow (class in mesoSPIM.src.mesoSPIM_ContrastWindow) mesoSPIM_Core (class in mesoSPIM.src.mesoSPIM_Core) mesoSPIM_DemoCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_DemoFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel) mesoSPIM_DemoStage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_DemoWaveFormGenerator (class in mesoSPIM.src.mesoSPIM_WaveFormGenerator) mesoSPIM_GenericCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_HamamatsuCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_ImageWriter (class in mesoSPIM.src.mesoSPIM_ImageWriter) mesoSPIM_JoystickHandler (class in mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers) mesoSPIM_LaserEnabler (class in mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler) mesoSPIM_MainWindow (class in mesoSPIM.src.mesoSPIM_MainWindow) mesoSPIM_Optimizer (class in mesoSPIM.src.mesoSPIM_Optimizer) mesoSPIM_PCOCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_PhotometricsCamera (class in mesoSPIM.src.mesoSPIM_Camera) mesoSPIM_PI_1toN (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_PI_NtoN (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_PI_rotz_and_Galil_xyf_Stages (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_ScriptWindow (class in mesoSPIM.src.mesoSPIM_ScriptWindow) mesoSPIM_Serial (class in mesoSPIM.src.mesoSPIM_Serial) mesoSPIM_Stage (class in mesoSPIM.src.mesoSPIM_Stages) mesoSPIM_StateSingleton (class in mesoSPIM.src.mesoSPIM_State) mesoSPIM_TileViewWindow (class in mesoSPIM.src.mesoSPIM_TileViewWindow) mesoSPIM_WaveFormGenerator (class in mesoSPIM.src.mesoSPIM_WaveFormGenerator) mimeData() (mesoSPIM.src.utils.models.AcquisitionModel method) MitutoyoZoom (class in mesoSPIM.src.mesoSPIM_Zoom) mode (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) mode_handler() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) model_changed (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) module mesoSPIM mesoSPIM.mesoSPIM_Control mesoSPIM.src mesoSPIM.src.devices mesoSPIM.src.devices.cameras mesoSPIM.src.devices.cameras.Demo_Camera mesoSPIM.src.devices.cameras.hamamatsu mesoSPIM.src.devices.filter_wheels mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel mesoSPIM.src.devices.filter_wheels.ZWO_EFW mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw mesoSPIM.src.devices.joysticks mesoSPIM.src.devices.joysticks.Demo_SidePanel mesoSPIM.src.devices.joysticks.logitech mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers mesoSPIM.src.devices.lasers mesoSPIM.src.devices.lasers.Demo_LaserEnabler mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler mesoSPIM.src.devices.servos mesoSPIM.src.devices.shutters mesoSPIM.src.devices.shutters.Demo_Shutter mesoSPIM.src.devices.shutters.NI_Shutter mesoSPIM.src.devices.stages mesoSPIM.src.devices.stages.asi mesoSPIM.src.devices.stages.asi.asicontrol mesoSPIM.src.devices.stages.galil mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow mesoSPIM.src.mesoSPIM_Camera mesoSPIM.src.mesoSPIM_CameraWindow mesoSPIM.src.mesoSPIM_ContrastWindow mesoSPIM.src.mesoSPIM_Core mesoSPIM.src.mesoSPIM_ImageWriter mesoSPIM.src.mesoSPIM_MainWindow mesoSPIM.src.mesoSPIM_Optimizer mesoSPIM.src.mesoSPIM_ScriptWindow mesoSPIM.src.mesoSPIM_Serial mesoSPIM.src.mesoSPIM_Stages mesoSPIM.src.mesoSPIM_State mesoSPIM.src.mesoSPIM_TileViewWindow mesoSPIM.src.mesoSPIM_WaveFormGenerator mesoSPIM.src.mesoSPIM_Zoom mesoSPIM.src.utils mesoSPIM.src.utils.acquisitions mesoSPIM.src.utils.delegates mesoSPIM.src.utils.filename_wizard mesoSPIM.src.utils.focus_tracking_wizard mesoSPIM.src.utils.image_processing_wizard mesoSPIM.src.utils.models mesoSPIM.src.utils.multicolor_acquisition_builder mesoSPIM.src.utils.multicolor_acquisition_wizard mesoSPIM.src.utils.optimization mesoSPIM.src.utils.utility_functions mesoSPIM.src.utils.waveforms mesoSPIM.src.utils.widgets mesoSPIM.src.WebcamWindow mesoSPIM.test move_absolute() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) move_relative() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) move_selected_row_down() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) move_selected_row_up() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) moveRows() (mesoSPIM.src.utils.models.AcquisitionModel method) MulticolorTilingAcquisitionListBuilder (class in mesoSPIM.src.utils.multicolor_acquisition_builder) MulticolorTilingWizard (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) MyStyle (class in mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow)

N

nextId() (mesoSPIM.src.utils.filename_wizard.AbstractSelectionPage method) (mesoSPIM.src.utils.filename_wizard.FilenameWizardRawSelectionPage method) (mesoSPIM.src.utils.filename_wizard.FilenameWizardWelcomePage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.FifthChannelPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.FirstChannelPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.FourthChannelPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.SecondChannelPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.ThirdChannelPage method)

NI_Shutter (class in mesoSPIM.src.devices.shutters.NI_Shutter) num_of_pages (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute)

O

on_scale_changed() (mesoSPIM.src.mesoSPIM_TileViewWindow.mesoSPIM_TileViewWindow method) Open() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) open() (mesoSPIM.src.devices.shutters.Demo_Shutter.Demo_Shutter method) (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) open_camera() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method)

open_shutters() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) open_tiff() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) open_tile_view_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) open_webcam_window() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) operators (mesoSPIM.src.mesoSPIM_ScriptWindow.PythonHighlighter attribute)

P

pause() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) pitools (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute) plot_results() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) pos2str() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) prepare_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method)

prepare_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) prepare_image_series() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) prepare_live() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) preview_acquisition() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) print_camera_properties() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) print_dict() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) ProgressBarDelegate (class in mesoSPIM.src.utils.delegates) px2um() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) PythonHighlighter (class in mesoSPIM.src.mesoSPIM_ScriptWindow)

R

raw (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) read() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) read_config_parameter() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) read_position() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) removeRows() (mesoSPIM.src.utils.models.AcquisitionModel method) replace_with_underscores() (in module mesoSPIM.src.utils.utility_functions) report_position() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) report_pvcam_parameter() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) rescale_galvo_amplitude_by_zoom() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) results_string() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) RotationSpinBoxDelegate (class in mesoSPIM.src.utils.delegates)

rowCount() (mesoSPIM.src.utils.models.AcquisitionModel method) run() (in module mesoSPIM.mesoSPIM_Control) run_acquisition() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) run_acquisition_list() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_focus_tracking_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_image_processing_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_lightsheet_alignment_mode() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_live() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_optimization() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) run_selected_acquisition() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_snap() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) run_tiling_wizard() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) run_time_lapse() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) run_timepoint() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) run_visual_mode() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method)

S

sample_handler() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) save_etl_config() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) save_etl_parameters_to_csv() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) save_script() (mesoSPIM.src.mesoSPIM_ScriptWindow.mesoSPIM_ScriptWindow method) save_table() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) saveModel() (mesoSPIM.src.utils.models.AcquisitionModel method) sawtooth() (in module mesoSPIM.src.utils.waveforms) scale_galvo_amp_w_zoom() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) SecondChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) selected_row_changed() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) send_data_changed() (mesoSPIM.src.utils.models.AcquisitionModel method) send_progress() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) send_status_message() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) send_status_message_to_gui() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_binning() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_DemoCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_camera_binning() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_display_acquisition_subsampling() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_display_live_subsampling() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) set_camera_exposure_time() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_camera_line_interval() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_camera_sensor_mode() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) set_combobox_to_index() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) set_combobox_to_string() (mesoSPIM.src.devices.joysticks.mesoSPIM_JoystickHandlers.mesoSPIM_JoystickHandler method) set_etl_amp_to_zero() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_exposure_time() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_filter() (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.DynamixelFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.LudlFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.mesoSPIM_DemoFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.SutterLambda10BFilterWheel method) (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.ZwoFilterWheel method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) set_folder_names() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_image() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) (mesoSPIM.src.mesoSPIM_ContrastWindow.mesoSPIM_ContrastWindow method) set_intensity() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_item_delegates() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_laser() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_laser_intensity() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_line_interval() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_GenericCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_HamamatsuCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PCOCamera method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_PhotometricsCamera method) set_mode_from_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_model_data_from_button() (mesoSPIM.src.utils.delegates.MarkFocusPositionDelegate method) (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) (mesoSPIM.src.utils.delegates.MarkRotationPositionDelegate method) (mesoSPIM.src.utils.delegates.MarkXPositionDelegate method) (mesoSPIM.src.utils.delegates.MarkYPositionDelegate method) (mesoSPIM.src.utils.delegates.MarkZPositionDelegate method) set_model_data_from_focus_change() (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) set_model_data_from_lineedit() (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) set_parameters() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) (mesoSPIM.src.mesoSPIM_State.mesoSPIM_StateSingleton method) set_processing_options() (mesoSPIM.src.utils.image_processing_wizard.ImageProcessingWizard method) set_progressbars_to_busy() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_progressbars_to_standard() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) set_roi() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_selected_row() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) set_shutterconfig() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) set_speed_from_config() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) set_state() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) set_zoom() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_Zoom.DemoZoom method) (mesoSPIM.src.mesoSPIM_Zoom.DynamixelZoom method) (mesoSPIM.src.mesoSPIM_Zoom.MitutoyoZoom method) setData() (mesoSPIM.src.utils.models.AcquisitionModel method) setDataFromState() (mesoSPIM.src.utils.models.AcquisitionModel method) SetDirection() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) setEditorData() (mesoSPIM.src.utils.delegates.ChooseFolderDelegate method) (mesoSPIM.src.utils.delegates.ComboDelegate method) (mesoSPIM.src.utils.delegates.ETLSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.IntensitySpinBoxDelegate method) (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) (mesoSPIM.src.utils.delegates.ProgressBarDelegate method) (mesoSPIM.src.utils.delegates.RotationSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.SliderDelegate method) (mesoSPIM.src.utils.delegates.SliderWithValueDelegate method) (mesoSPIM.src.utils.delegates.ZstepSpinBoxDelegate method) SetFiltersNames() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) setModelData() (mesoSPIM.src.utils.delegates.ChooseFolderDelegate method) (mesoSPIM.src.utils.delegates.ComboDelegate method) (mesoSPIM.src.utils.delegates.ETLSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) (mesoSPIM.src.utils.delegates.ProgressBarDelegate method) (mesoSPIM.src.utils.delegates.RotationSpinBoxDelegate method) (mesoSPIM.src.utils.delegates.SliderDelegate method) (mesoSPIM.src.utils.delegates.SliderWithValueDelegate method) (mesoSPIM.src.utils.delegates.ZstepSpinBoxDelegate method) SetPosition() (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW method) setShutterconfig() (mesoSPIM.src.utils.models.AcquisitionModel method) setTable() (mesoSPIM.src.utils.models.AcquisitionModel method) setText() (mesoSPIM.src.utils.widgets.SliderWithValue method) setValue() (mesoSPIM.src.utils.widgets.SliderWithValue method) shannon_dct() (in module mesoSPIM.src.utils.optimization)

show_current_FOV() (mesoSPIM.src.mesoSPIM_TileViewWindow.mesoSPIM_TileViewWindow method) show_tiles() (mesoSPIM.src.mesoSPIM_TileViewWindow.mesoSPIM_TileViewWindow method) sig_add_images_to_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_axis_moved (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) sig_button_pressed (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) sig_enable_gui (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_end_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_end_live (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_execute_script (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_ScriptWindow.mesoSPIM_ScriptWindow attribute) sig_get_snap_image (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_launch_optimizer (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_mode_changed (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) sig_move_absolute (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer attribute) (mesoSPIM.src.WebcamWindow.WebcamWindow attribute) sig_move_relative (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) sig_move_relative_and_wait_until_done (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_pause (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) sig_polling_stage_position_start (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_polling_stage_position_stop (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_position (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) sig_prepare_image_series (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_progress (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_run_timepoint (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_scale_changed (mesoSPIM.src.mesoSPIM_TileViewWindow.mesoSPIM_TileViewWindow attribute) sig_start_timer (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) sig_state_request (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.WebcamWindow.WebcamWindow attribute) sig_state_request_and_wait_until_done (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_status_message (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) sig_stop_timer (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel attribute) sig_unzero_axes (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) sig_update_roi (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow attribute) sig_warning (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_write_images (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera attribute) sig_write_metadata (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) sig_zero_axes (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core attribute) (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow attribute) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) sigma2fwhm() (in module mesoSPIM.src.utils.optimization) single_hdf5 (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) single_pulse() (in module mesoSPIM.src.utils.waveforms) SliderDelegate (class in mesoSPIM.src.utils.delegates) SliderWithValue (class in mesoSPIM.src.utils.widgets) SliderWithValueDelegate (class in mesoSPIM.src.utils.delegates) slotNums (mesoSPIM.src.devices.filter_wheels.ZWO_EFW.pyzwoefw.EFW attribute) slow_down_spinbox() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) snap() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) snap_image() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) snap_image_in_series() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) spinbox_to_state_parameter() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) square() (in module mesoSPIM.src.utils.waveforms) stage_limits_OK() (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) stage_limits_warning (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial attribute) stage_referencing_check() (in module mesoSPIM.mesoSPIM_Control) StageControlASITiger (class in mesoSPIM.src.devices.stages.asi.asicontrol) start() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) start_axis_timer() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) start_capture() (mesoSPIM.src.WebcamWindow.WebcamWindow method) start_selected() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) start_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) startAcquisition() (mesoSPIM.src.devices.cameras.Demo_Camera.Demo_Camera method) state (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage attribute) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) (mesoSPIM.src.mesoSPIM_TileViewWindow.mesoSPIM_TileViewWindow attribute) (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard attribute) state() (mesoSPIM.src.devices.lasers.Demo_LaserEnabler.Demo_LaserEnabler method) (mesoSPIM.src.devices.lasers.mesoSPIM_LaserEnabler.mesoSPIM_LaserEnabler method) (mesoSPIM.src.devices.shutters.Demo_Shutter.Demo_Shutter method) (mesoSPIM.src.devices.shutters.NI_Shutter.NI_Shutter method) state_request_handler() (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Serial.mesoSPIM_Serial method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) statusBar (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow attribute) stop() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) (mesoSPIM.src.mesoSPIM_Camera.mesoSPIM_Camera method) (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) stop_axis_timer() (mesoSPIM.src.devices.joysticks.logitech.FarmSimulatorSidePanel method) stop_movement() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) stop_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) SutterLambda10BFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel)

T

theta_pos (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage attribute) ThirdChannelPage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard)

tiff (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) TilingWelcomePage (class in mesoSPIM.src.utils.multicolor_acquisition_wizard) tunable_lens_ramp() (in module mesoSPIM.src.utils.waveforms)

U

unload_sample() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_MS2000_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_ASI_Tiger_Stage method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_1toN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) unzero_axes() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) update_acquisition_list() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) update_acquisition_size_prediction() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) update_acquisition_time_prediction() (mesoSPIM.src.mesoSPIM_AcquisitionManagerWindow.mesoSPIM_AcquisitionManagerWindow method) update_end_focus_position() (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method) update_etl_increments() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_etl_parameters_from_csv() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_etl_parameters_from_laser() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_etl_parameters_from_zoom() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method) update_filenames_in_model() (mesoSPIM.src.utils.filename_wizard.FilenameWizard method) update_focus_positions_in_model() (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizard method) update_fov_size() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method)

update_gui() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) update_GUI_by_shutter_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_gui_from_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_image() (mesoSPIM.src.mesoSPIM_Optimizer.mesoSPIM_Optimizer method) update_image_counts() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) update_image_from_deque() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) update_model() (mesoSPIM.src.utils.multicolor_acquisition_wizard.MulticolorTilingWizard method) update_other_acquisition_parameters() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) update_page_from_state() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method) update_position_indicators() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_progressbars() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_shutt_seq() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) update_start_focus_position() (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method) update_status() (mesoSPIM.src.mesoSPIM_CameraWindow.mesoSPIM_CameraWindow method) update_widget_from_state() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) update_x_and_y_offset() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) update_z_step() (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineBoundingBoxPage method) updateEditorGeometry() (mesoSPIM.src.utils.delegates.MarkPositionDelegate method) updatePlanes() (mesoSPIM.src.utils.models.AcquisitionModel method)

V

validatePage() (mesoSPIM.src.utils.filename_wizard.AbstractSelectionPage method) (mesoSPIM.src.utils.filename_wizard.FilenameWizardRawSelectionPage method) (mesoSPIM.src.utils.filename_wizard.FilenameWizardSingleHDF5SelectionPage method) (mesoSPIM.src.utils.focus_tracking_wizard.FocusTrackingWizardSetReferencePointsPage method) (mesoSPIM.src.utils.image_processing_wizard.ImageProcessingWizardSetOptionsPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.DefineGeneralParametersPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.FinishedTilingPage method) (mesoSPIM.src.utils.multicolor_acquisition_wizard.GenericChannelPage method)

value() (mesoSPIM.src.utils.widgets.SliderWithValue method) valueChanged (mesoSPIM.src.utils.widgets.SliderWithValue attribute) visual_mode() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method)

W

wait_for_controller() (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_NtoN method) wait_until_done() (mesoSPIM.src.devices.stages.asi.asicontrol.StageControlASITiger method) wait_until_done_delay (mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel.LudlFilterWheel attribute) WebcamWindow (class in mesoSPIM.src.WebcamWindow) welcome (mesoSPIM.src.utils.filename_wizard.FilenameWizard attribute) write_images() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method)

write_line() (in module mesoSPIM.src.utils.utility_functions) write_metadata() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_snap_image() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_snap_metadata() (mesoSPIM.src.mesoSPIM_ImageWriter.mesoSPIM_ImageWriter method) write_waveforms_to_tasks() (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_DemoWaveFormGenerator method) (mesoSPIM.src.mesoSPIM_WaveFormGenerator.mesoSPIM_WaveFormGenerator method)

X

xyf_stage (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_PI_rotz_and_Galil_xyf_Stages attribute)

Y

y_end (mesoSPIM.src.utils.multicolor_acquisition_builder.MulticolorTilingAcquisitionListBuilder attribute)

Z

zero_axes() (mesoSPIM.src.mesoSPIM_Core.mesoSPIM_Core method) (mesoSPIM.src.mesoSPIM_Stages.mesoSPIM_Stage method) zero_galvo_amp() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method)

zero_left_etl() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) zero_right_etl() (mesoSPIM.src.mesoSPIM_MainWindow.mesoSPIM_MainWindow method) ZstepSpinBoxDelegate (class in mesoSPIM.src.utils.delegates) ZwoFilterWheel (class in mesoSPIM.src.devices.filter_wheels.mesoSPIM_FilterWheel)